Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0811935 with 4 members (DUF4201 domain-containing protein)

Eukaryota / Viridiplantae /

Completeness score: 0.04

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This HOG has 70 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0804722.4b.4a	53	157	coiled-coil domain containing 113
2	HOG:E0801468.10lus.6418b	47	44	domain-containing protein
3	HOG:E0781639.1e.1a.1b.1a.1a	31	25	coiled-coil domain containing 96
4	HOG:E0804722.3b	27	15	coiled-coil domain containing 113
5	HOG:E0781639.1e.1b.2a	27	22	coiled-coil domain containing 96
6	HOG:E0781639.1e.1a.1b.1a	19	35	coiled-coil domain containing 96
7	HOG:E0781639.1d	18	8	coiled-coil domain containing 96
8	HOG:E0811935	13	23	DUF4201 domain-containing protein
9	HOG:E0811935.1b	10	9	DUF4201 domain-containing protein
10	HOG:E0804722.7b	8	3	coiled-coil domain containing 113
11	HOG:E0801468.10lus.6418b.5013a	8	5	domain-containing protein
12	HOG:E0804722	7	328	coiled-coil domain containing 113
13	HOG:E0781639.1c	7	5	coiled-coil domain containing 96
14	HOG:E0781639.1b	6	5	coiled-coil domain containing 96
15	HOG:E0781639.1a	6	3	coiled-coil domain containing 96
16	HOG:E0801468.10lus	5	52	domain-containing protein
17	HOG:E0804722.4b.4b	4	73	coiled-coil domain containing 113
18	HOG:E0784967	4	4	DUF4201 domain-containing protein
19	HOG:E0781639.1e.1a	4	39	coiled-coil domain containing 96
20	HOG:E0151917	4	2	DUF4201 domain-containing protein
21	HOG:E0804722.4a.3a	3	1	coiled-coil domain containing 113
22	HOG:E0801468.10sab.7229a	3	15	domain-containing protein
23	HOG:E0807212.1b	2	1	DUF4201 domain-containing protein
24	HOG:E0807212	2	4	DUF4201 domain-containing protein
25	HOG:E0804722.8a	2	3	coiled-coil domain containing 113

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